image_valid Examples

This document contains JSON examples for image_valid metadata layouts.

missing_version

{
    "@type": "ngff:Image",
    "multiscales": [
        {
            "name": "example",
            "datasets": [
                {
                    "path": "path/to/0"
                }
            ],
            "axes": [
                "z",
                "y",
                "x"
            ]
        }
    ]
}

image_omero

{
    "@id": "#my-image",
    "@type": "ngff:Image",
    "multiscales": [
        {
            "@id": "#my-pyramid",
            "version": "0.3",
            "name": "example",
            "datasets": [
                {
                    "path": "path/to/0"
                },
                {
                    "path": "1"
                },
                {
                    "path": "2"
                }
            ],
            "type": "gaussian",
            "metadata": {
                "method": "skimage.transform.pyramid_gaussian",
                "version": "0.16.1",
                "args": [
                    "true",
                    "false"
                ],
                "kwargs": {
                    "multichannel": true
                }
            },
            "axes": [
                "z",
                "y",
                "x"
            ]
        }
    ],
    "omero": {
        "id": 1,
        "version": "0.3",
        "channels": [
            {
                "active": true,
                "color": "0000FF",
                "family": "linear",
                "inverted": false,
                "label": "1234",
                "window": {
                    "end": 1765.0,
                    "max": 2555.0,
                    "min": 5.0,
                    "start": 0.0
                }
            }
        ],
        "rdefs": {
            "defaultZ": 0,
            "defaultT": 0,
            "model": "color"
        }
    }
}

missing_name

{
    "@type": "ngff:Image",
    "multiscales": [
        {
            "version": "0.3",
            "datasets": [
                {
                    "path": "path/to/0"
                }
            ],
            "type": "gaussian",
            "metadata": {
                "method": "skimage.transform.pyramid_gaussian",
                "version": "0.16.1",
                "args": [
                    "true",
                    "false"
                ],
                "kwargs": {
                    "multichannel": true
                }
            },
            "axes": [
                "z",
                "y",
                "x"
            ]
        }
    ]
}

image_metadata

{
    "@id": "top",
    "@type": "ngff:Image",
    "multiscales": [
        {
            "@id": "inner",
            "version": "0.3",
            "name": "example",
            "datasets": [
                {
                    "path": "path/to/0"
                }
            ],
            "type": "gaussian",
            "metadata": {
                "method": "skimage.transform.pyramid_gaussian",
                "version": "0.16.1",
                "args": [
                    "true",
                    "false"
                ],
                "kwargs": {
                    "multichannel": true
                }
            },
            "axes": [
                "z",
                "y",
                "x"
            ]
        }
    ]
}

image

{
    "@type": "ngff:Image",
    "multiscales": [
        {
            "datasets": [
                {"path": "path/to/0"},
                {"path": "1"},
                {"path": "2"}
            ],
            "axes": [
                "z", "y", "x"
            ]
        }
    ]
}